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Publications

in this section

Almost everything has eventually appeared in a refereed journal article so only such articles are listed.

I write grant proposals to the US National Institutes of Health (NIH) and they basically require that I have a bibliography on their server.  So I have stopped updating the list given below.  Please go to NIH's server which is https://www.ncbi.nlm.nih.gov/sites/myncbi/peter.doerschuk.1/bibliography/48725618/public/?sort=date&direction=ascending .  Thank you!

  • Peter C. Doerschuk, Robert R. Tenney, and Alan S. Willsky, "Modeling Electrocardiograms Using Interacting Markov Chains," International Journal of Systems Science, vol. 21, no. 2, pp. 257-283, 1990.
  • Peter C. Doerschuk, Robert R. Tenney, and Alan S. Willsky, "Event Based Estimation of Interacting Markov Chains with Applications to Electrocardiogram Analysis," International Journal of Systems Science, vol. 21, no. 2, pp. 285-304, 1990.
  • Shan Lu, Peter C. Doerschuk, George R. Wodicka, "Parametric Phase Delay Estimation of Sound Transmitted Through Intact Human Lung," Medical & Biological Engineering & Computing, vol. 33, no. 3, pp. 293-298, May 1995.  http://www.ncbi.nlm.nih.gov/pubmed/7475365
  • Samir Patel, Shan Lu, Peter C. Doerschuk, George R. Wodicka, "Sonic Phase Delay from Trachae to Chest Wall: Spatial and Inhaled Gas Dependence," Medical & Biological Engineering & Computing, vol. 33, no. 4, pp. 571-574, July 1995.  http://www.ncbi.nlm.nih.gov/pubmed/7475389
  • Chi-hsin Wu, Peter C. Doerschuk, "Texture-based Segmentation Using Markov Random Field Models and Approximate Bayesian Estimators Based on Trees," Journal of Mathematical Imaging and Vision, vol. 5, no. 4, pp. 277-286, December 1995 (Invited).  http://link.springer.com/article/10.1007/BF01250284
  • Yibin Zheng, Peter C. Doerschuk, John E. Johnson, "Determination of Three-dimensional Low-resolution Viral Structure from Solution X-ray Scattering Data," Biophysical Journal, vol. 69, no. 2, pp. 619-639, August 1995.  http://www.ncbi.nlm.nih.gov/pubmed/8527677
  • Wai Ying Kan, James V. Krogmeier, Peter C. Doerschuk, "Model-Based Vehicle Tracking from Image Sequences with an Application to Road Surveillance," Optical Engineering, vol. 35, no. 6, pp. 1723-1729, June 1996.  http://spie.org/x648.html?product_id=231891
  • Yibin Zheng, Peter C. Doerschuk, "3-D Image Reconstruction from Averaged Fourier Transform Magnitude by Parameter Estimation," IEEE Transactions on Image Processing, vol. 7, no. 11, pp. 1561-1570, November 1998.  http://www.ncbi.nlm.nih.gov/pubmed/18276221 http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=402242
  • Ann E. Rundell, Raymond A. DeCarlo, Harm HogenEsch, Peter C. Doerschuk, "The humoral immune response to Haemophilus influenzae Type b: A mathematical model based on T-zone and germinal center B-cell dynamics," Journal of Theoretical Biology, vol. 194, pp. 341-381, 1998.  http://www.ncbi.nlm.nih.gov/pubmed/9778443
  • Yibin Zheng and Peter C. Doerschuk, "Explicit computation of orthonormal symmetrized harmonics with application to the identity representation of the icosahedral group," SIAM Journal on Mathematical Analysis, vol. 32, no. 3, pp. 538-554, 2000.  http://epubs.siam.org/doi/abs/10.1137/S0036141098341770
  • Zhye Yin, Yili Zheng, and Peter C. Doerschuk, "An ab initio algorithm for low-resolution 3-D reconstructions from cryoelectron microscopy images," Journal of Structural Biology, vol. 133, no. 2/3, pp. 132-142, February/March 2001.  http://www.ncbi.nlm.nih.gov/pubmed/11472085
  • Po-Han Chen, Yuh-Chin Chang, Luh-Maan Chang, Peter C. Doerschuk "Application of Multiresolution Pattern Classification to Steel Bridge Coating Assessment," J. Comp. in Civ. Engrg., vol. 16, no. 4, pp. 244-251, October 2002.
  • Zhye Yin, Yili Zheng, Peter C. Doerschuk, Padmaja Natarajan, and John E. Johnson, "A statistical approach to computer processing of cryo electron microscope images: virion classification and 3-D reconstruction," Journal of Structural Biology, vol. 144, pp. 24-50, 2003. http://www.ncbi.nlm.nih.gov/pubmed/14643207
  • Tianwei Lin, Wilfried Schildkamp, Keith Brister, Peter C. Doerschuk, Maddury Somayazulu, Ho-kwang Mao, and John E. Johnson, "The mechanism of high pressure induced ordering in a macromolecular crystal," Acta Crystallographica D, vol. D61, pp. 737-743, 2005.  http://www.ncbi.nlm.nih.gov/pubmed/15930631
  • Yili Zheng and Peter C. Doerschuk, "A Parallel Software Toolkit for Statistical 3-D Virus Reconstructions from Cryo Electron Microscopy Images Using Computer Clusters with Multi-core Shared-Memory Nodes", IEEE International Parallel & Distributed Processing Symposium 2008 (IEEE IPDPS'08), 11 pages, Miami, FL, April 14-18, 2008.  http://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=4536242 This is a selective Computer Engineering conference at which only 105 of 410 submissions were accepted and where the papers are both reviewed and revised and are as long as a regular IEEE Transactions paper.
  • Seunghee Lee, Peter C. Doerschuk, and John E. Johnson, "Reciprocal space representation of helical objects and their projection images for helices constructed from motifs without spherical symmetry", Ultramicroscopy, vol. 109, pp. 253-263, 2009.  http://www.ncbi.nlm.nih.gov/pubmed/19118951
  • Cory J. Prust, Peter C. Doerschuk, Gabriel C. Lander, and John E. Johnson, "Ab initio maximum likelihood reconstruction from cryo electron microscopy images of an infectious virion of the tailed bacteriophage P22 and maximum likelihood versions of Fourier Shell Correlation appropriate for measuring resolution of spherical or cylindrical objects", Journal of Structural Biology, vol. 167, no. 185-199, 2009.  http://www.ncbi.nlm.nih.gov/pubmed/19457456
  • Fred Sigworth, Peter C. Doerschuk, Jose-Maria Carazo, Sjors H. W. Scheres, "An introduction to maximum-likelihood methods in cryo EM", Methods in Enzymology, vol. 482, pp. 263-294, 2010, Elsevier.  http://www.ncbi.nlm.nih.gov/pubmed/20888965
  • Chi-yu Fu, Kang Wang, Jason Lanman, Reza Khayat, Mark J. Young, Grant J. Jensen, Peter C. Doerschuk, and John E. Johnson, "In Vivo Assembly of an Archaeal Virus Studied with Whole Cell Electron Cryotomography", Structure, vol. 18, no. 12, pp. 1579-1586, 8 December 2010.  http://www.ncbi.nlm.nih.gov/pubmed/21134637
  • Kang Wang and Chi-yu Fu and Reza Khayat and Peter C. Doerschuk and John E. Johnson, "In vivo virus structures: Simultaneous classification, resolution enhancement, and noise reduction in whole-cell electron tomography", Journal of Structural Biology, vol. 174, no. 3, pp. 425-433, 2011.  http://www.ncbi.nlm.nih.gov/pubmed/21396453
  • Martin H. Plawecki, Ulrich S. Zimmermann, Victor Vitvitskiy, Peter C. Doerschuk, David W. Crabb, Sean J. O'Connor, "Alcohol Exposure Rate Control through Physiologically-Based Pharmacokinetic Modeling", Alcoholism: Clinical and Experimental Research, vol. 36, no. 6, pp. 1042-1049, June 2012.  http://www.ncbi.nlm.nih.gov/pubmed/22486174
  • Thom P. Santisakultarm, Nathan R. Cornelius, Nozomi Nishimura, Andrew I. Schafer, Richard T. Silver, Peter C. Doerschuk, William L. Olbricht, and Chris B. Schaffer, "In Vivo Two-photon Excited Fluorescence Microscopy Reveals Cardiac- and Respiration-Dependent Pulsatile Blood Flow in Cortical Blood Vessels in Mice", Am J Physiol Heart Circ Physiol, vol. 302, pp. H1367-H1377, 2012.  http://www.ncbi.nlm.nih.gov/pubmed/22268102
  • Qiu Wang, Tsutomu Matsui, Tatiana Domitrovic, Yili Zheng, Peter C. Doerschuk, John E. Johnson, "Dynamics in cryo EM reconstructions visualized with maximum-likelihood derived variance maps", Journal of Structural Biology, vol. 181, no. 3, pp. 195-206, 2013.  http://www.ncbi.nlm.nih.gov/pubmed/23246781
  • Tatiana Domitrovic, Navid Movahed, Brian Bothner, Tsutomu Matsui, Qiu Wang, Peter Doerschuk, John E. Johnson "Virus Assembly and Maturation: Auto-regulation Through Allosteric Molecular Switches", Journal of Molecular Biology vol. 425, no. 9, pp. 1488-1496, 13 May, 2013.  http://www.ncbi.nlm.nih.gov/pubmed/23485419
  • Jinghua Tang, Bradley M. Kearney, Qiu Wang, Peter C. Doerschuk, Timothy S. Baker, and John E. Johnson, "Dynamic and geometric analyses of Nudaurelia capensis omega virus maturation reveal the energy landscape of particle transitions", J. Molecular Recognition, vol. 27, no. 4, pp. 230-237, 10 February 2014.  http://doi.org/10.1002/jmr.2354 http://www.ncbi.nlm.nih.gov/pubmed/24591180